Thursday, January 24, 2013

Course Syllabus


Syllabus
BIOLOGY II (for Life Science Majors)
BIOL 1404, SPRING 2013

Class Information
Section 001: MWF 9:00 a.m. in Biology LH100; Section 002: MWF 10:00 a.m. in Biology LH100.
Test period: Tu, 6:00-7:30 p.m.
Prerequisite: BIOL 1403.
1st half: Dr. Mark McGinley                                           2nd half: Ms. Carrie Monje,
Office: 215 McClellan,                                                   Of. Hrs: M-R, 1-1:30
                                                                                      Biology rm. 606C             
Of. Hrs: MWF. 11:00, or by appt.                                  
Group Of. Hrs: Monday 6:30 Room TBA                                              
e-mail: mark.mcginley@ttu.edu                                    e-mail: carrie.monje@ttu.edu
blog: http://biol14042013/blogspot.com/

Required materials:
1. Class Text: Campbell’s Biology, 9th ed., by Reece et al. or customized version for TTU, 2nd ed
2. Lab Text: Lab Manual for Biology II, by M. Dini
3. dissecting kit and 5-6 prs of examining gloves
Item 1 is available from area textbook stores.  Items 2 & 3 are available from TTUAB near room 025 in the Biology Bldg ‘til Jan. 30.
5. Homework Website: http://www.masteringbiology.com    ID#: MB14042013

1. COURSE OVERVIEW & GOALS

BIOL 1404 is the second semester of a rigorous, writing-intensive, two-semester course.  It is offered only during the spring, and designed to prepare life science majors for upper-level courses in the life sciences.  Whereas BIOL 1403 focuses on the particulars of cell biology, biochemistry, molecular biology, classical genetics, reproductive/developmental biology and evolutionary theory, BIOL 1404 focuses on organisms as they relate to other organisms and to their physical environments (ecology), biodiversity, as well as on plant and animal anatomy and physiology.  Overall, the course aims to give you a strong foundation in the principles of biology, many of which you may not encounter again in future courses.  The course is meant to introduce you to the way that scientists approach and solve problems leading to the construction of new knowledge.  It is also our hope that the course will continue to give you an important handle in your attempt to understand the place and role of humans in the world and, perhaps, your particular place in it.  Students enrolled in this course must have passed BIOL 1403, or its equivalent at another institution.  Students on academic probation, or who received a "W" or an "F" the last time they took BIOL 1403 should immediately drop this course.  This course partially satisfies the Natural Sciences Core Curriculum requirement.

2. EXPECTED LEARNING OUTCOMES AND METHODS FOR ASSESSING LEARNING OUTCOMES

A. Explain basic concepts of evolutionary ecology, general ecology, cellular energetics, plant water potential, biodiversity, animal anatomy & physiology.  ASSESSED BY: scores earned on expository essays on each of the four unit tests, and by in-class discussions.
B. Demonstrate skills in scientific reasoning and experimental design.  ASSESSED BY: group discussion and subsequent reporting via “clickers,” by scores earned on a mid-semester laboratory science process skills test, and by scores earned on written lab reports.
C. Demonstrate ability to write research reports including: abstract, introduction, materials and methods, results, discussion, acknowledgments, and literature cited.  ASSESSED BY:  scores on draft & final versions of written lab reports.
D. Students graduating from Texas Tech University should be able to explain some of the major concepts in the Natural Sciences and demonstrate an understanding of scientific approaches to problem solving, including ethics.  ASSESSED BY: scores on expository essays on each of the four unit tests, and by end-of-semester performance on laboratory science process skills test.

3. ENROLLMENT & ATTENDANCE

You should be enrolled separately in a lecture section (001 or 002) and in a laboratory section (501-521).  See Dr. McGinley immediately if you have doubts about your enrollment.  Regular attendance is critical for the success of BIOL 1404 students.  Success in this course will require a good set of notes, hopefully written by yourself, and the critical reading of all assigned pages in the textbook, for there will be test questions on material that has not been covered in lecture.  Class will often begin with verbal announcements that are not formally duplicated anywhere else.  You are responsible for getting missed announcements from classmates.  We consider more than two absences during the semester to be excessive.  It does not matter why you are not present in lecture.  The simple fact is that if you are not present, you will not learn the material as well as you otherwise would.  During the 2nd half of the semester, class participation will be monitored using the H-iTT devices.  Particularly important is your regular attendance in lab.  You must attend the lab section in which you are enrolled.  More than two unexcused absences from lab will result in the loss of ALL points connected with the laboratory portion of this course.  Not only should you be in class at every class meeting, but you should be attentive as well.  Chatting, texting, dozing, reading newspapers, or listening to music during class are totally uncool and are not tolerated.  Access to the Worldwide Web is important for success in this course.  Firefox is the preferred browser for the MasteringBiology homework website.

4. EVALUATION

Your semester letter grade will be determined from the scores you earn on four unit tests (45%), on your laboratory work (32%), on the cumulative final exam (14%), and on on-line homework (9%).   The scores for this course are not curved.  Letter grades will be determined by the number of raw points you earn (NOT the percentage), according to the following scale:

A = 979-1100                 B = 858-978                  C = 737-857                  D = 616-736                  F < 616

The four unit tests are worth 100 points each.  If you take all four units tests, your highest score on these four tests will be doubled at semester’s end, thereby making these tests worth 500 out of the 1100 points possible by semester’s end.  The cumulative final exam is worth 150 points.  On-line homework will consist of 14 assignments of varying point value.  Late homework is not accepted.  The distribution of the 350 points connected with your laboratory work will be explained at the first lab meeting.  Computer-graded portions of tests will be composed of multiple-choice and/or matching questions.  Tests 1-3 may also contain essays.  No test scores will be dropped. 

Most of the points for each test (90-95%) will be drawn from material covered in class.  Thus, a good set of notes will be of much assistance in learning the material.  Roughly 5-10% of each test will be drawn from material in the textbook or other assigned readings, but not covered in class.  Videotapes of our lectures will be available online at http://mediacast.ttu.edu but you should be aware that equipment is subject to failure and to inexperience; thus, videotapes for all lectures are not guaranteed.  You may record the audio portions of lectures (NO video recordings or photographs), but recordings may be used only to study biology unless you have our permission to use them for other purposes.  Cellular phones, palm pilots, pagers, and beepers may not be used during tests, labs, or lectures, unless directed by the instructor.  Computers may not be used during tests.  You may be asked to leave if your devices disturb the class.

We will make an effort to design tests that challenge you to do more than regurgitate facts.  Repetitious reading of textbook and notes as a sole means of studying will get you no better than a grade of "C" because tests will ask you to apply, integrate, and evaluate information in situations which may be different from those covered in class.  They will be tests of your understanding of the principles of biology, not solely tests of your ability to memorize and recall. For test preparation, former tests used for the 2nd half of the semester can be found at Dr. Dini’s website <http://courses.ttu.edu/biol1403-mdini>. Tests may include material covered in previous testing units.  Students are invited to create and submit sample multiple-choice questions for potential inclusion into all tests.  A review session will be held before each unit test, usually on Monday evenings from 5-6.

Tests will be on Tuesday evenings at 6:00 sharp (see schedule for dates) and will last 90 minutes.  You must be prepared to present a photo ID (does not have to be a Tech ID) at all tests; failure to do so can result in the disqualification of your test.  Also, bring two #2 pencils and a pen.  We will provide scantron forms.  Anyone entering the test after someone has completed the test and left the room will not be allowed to take that test.  While tests are scheduled at a frequency of about once a month, the test period on Tuesday afternoons will often be used for optional activities such as discussions of current topics, enhancing study or test-taking skills, administering re-tests, going over old tests, working on sample test questions, etc.  We strongly encourage you to be present for as many of these sessions as you can.  Not all lab instructors are equal.  As a result, it may be necessary to normalize lab scores in certain lab sections at the end of the semester.

5. UNDERSTANDING EVALUATION

Evaluating student performance is a complex and difficult process.  While students cannot be pigeonholed, they can be judged on the basis of their achievements.  Effort is an important component of achievement, but we cannot accurately gauge your effort.  We are limited to measuring achievement by the number of points you earn.  Below are descriptions of typical "A" and "C" students in BIOL 1403/1404 modified from an article in The Teaching Professor, August/September 1993.

The "A" Student -- An Outstanding Student                  The "C" Student -- A Mediocre Student
Attendance: "A" students have virtually perfect               Attendance: "C" students sometimes miss class.  They
  attendance.  Their commitment to the class                    put other priorities ahead of academic work.  In some
  resembles that of the teacher.                                        cases, their health or constant fatigue renders them
Preparation: "A" students are prepared for class.                         physically unable to keep up with the demands of
  They always read the assigned pages.  Their                  high-level performance.
  attention to detail is such that they occasionally                        Preparation: "C" students prepare their assignments
  catch the teacher in a mistake.                                      consistently but in a perfunctory manner.  Their work
Curiosity: "A" students show interest in the class                         may be sloppy or careless.  At times, it is incomplete.
  and in biology.  They look up or dig out what               Curiosity: "C" students' interests are limited to issues
  they don't understand.  They often ask inter-                   like "Do we have to know this for the test?"  They
  esting questions or make thoughtful comments.                        are most interested in coping or getting by.  Their
Retention: "A" students have retentive minds.                   goal is to spend as little time as possible in lab or
  They are able to connect past learning with the                           studying.
  present.  They bring a background with them to            Retention: "C" students only memorized things for
  class and they continually check new information            tests in high school; thus, they bring little background            against what they previously learned.                               to the class.  They will probably take little from it
Attitude: "A" students have a winning attitude.                  because they still use the same poor study habits.
 They have both the determination and the self-              Attitude: "C" students are not visibly committed to the
  discipline necessary for success.  They show                 class.  They participate without enthusiasm.  Their
  initiative.  They do things they have not been                  body language often expresses boredom.
  told to do.                                                                  Talent: "C" students vary enormously in talent.  Some
Talent: "A" students have something special.  It                have exceptional ability, but show undeniable signs
  may be exceptional insight and intelligence.  It                of poor self-discipline or bad attitudes.  Others are
  may be unusual creativity, organizational skills,               diligent, but below-average in academic ability.
  commitment -- or a combination thereof.  These            Results: "C" students obtain mediocre or inconsistent
  gifts are evident to the teacher and usually to                 results on tests.  They have some concept of what is
  other students as well.                                                   going on, but clearly have not mastered the material.
Results: "A" students make high grades on tests --
  usually the highest in the class.  Their lab work is
  a pleasure to read.

                        Grade Distributions for the last two BIOL 1404 Classes
                        spring 2011                               spring 2012
                        A = 11.9%                                 A = 8.1%
                        B = 31.0%                                 B = 32.5%
                        C = 37.2%                                 C = 37.2%
                        D = 15.6%                                D = 15.0%
                        F = 4.1%                                   F = 7.2%
                        W = 6.2%                                  W = 11.2%

NOTE: Letter grade proportions were calculated based on the number of students enrolled on the last day of class, whereas “W” proportions were figured according to students enrolled on the 12th day of class.

6. SUPPLEMENTAL INSTRUCTION

The SOAR Center will sponsor Supplemental Instruction (SI) specifically for BIOL 1404 students.  The student leaders, Jeffrey Chen & Suzanne Alkul, will attend all lectures, and will offer free instructional SI sessions at times and places to be announced.  This is a superb opportunity to get help from a peer who is also an expert.

7. TEST GRIEVANCE PROCEDURES

During the week of Feb. 5-8, fifteen randomly selected lab sections may elect a representative to the Biology Advisory Committee (BAC) following brief presentations by the candidates concerning their qualifications for the position.  This committee of students will meet the Wednesday afternoon following each regular unit test in order to evaluate student comments/criticisms about test items and to forward their recommendations to the course instructors, who will take these recommendations under advisement.  The qualifications to serve on the committee are that the student took BIOL 1403 at Texas Tech and received a "C" or better, and that the student be free Wednesdays from 4-5 p.m.

Suspected errors in the filling in of any part of the scantron form must be brought to the proper instructors' attention within one week of the posting of scores.  Please do not procrastinate; check the posted scores as soon as possible.

8. WITHDRAWAL FROM COURSE

Students who think they should withdraw from the course should be aware that this course is offered only once a year, during the spring semester.  Withdrawal must take place before 5:00 on March 27.  You need not inform the instructor, but it is helpful if you inform your lab instructor and lab partners of your intention to withdraw.  Failure to withdraw properly will result in the grade of “F.”   Students who plan to take this course elsewhere and transfer the credits to Texas Tech must insure that the other institution’s course (a) is designated specifically for majors (not non-majors and not both), (b) has a 3-h laboratory component, and (c) is a course that treats most of the following principles of biology: basic ecology; biodiversity; plant anatomy/physiology, and animal anatomy/physiology.

9. OTHER RELEVANT INFORMATION

Dishonesty on exams, homework, written work or connected with your attendance in lab or lecture will meet with the most serious consequences.  Students are expected to be aware of, and abide by, the University's Honor code.  Plagiarism on written lab reports or essays (copying/paraphrasing from other students or from other sources without giving due credit) will result in the loss of all points for that exercise, at the very least.

Disabling conditions: Any student who, because of a disabling condition (e.g. diabetes, epilepsy, dyslexia) may require special arrangements in order to meet course requirements should contact us as soon as possible so that accommodations can be made.  Students should present appropriate verification from Disabled Student Services, Dean of Students Office.  No requirement exists that accommodations be made prior to completion of this University procedure.  Religious holidays: Any student who will miss tests because of recognized religious holidays should notify us as soon as possible so alternative arrangements can be made.

Can we talk?  We can talk about anything you'd like.  No appointment is necessary to see us during office hours -- just drop in.  If office hours are not convenient, then feel free to make an appointment. You can also e-mail us..  We should tell you that we are not happy to deliver all or part of a lecture to someone who has missed class.

10. SCHEDULING

The final four lectures will be covered as part of the Cumulative Final Exam, which is on Thursday, May 9th, from 10:30 to 1:00 p.m. at locations to be announced in class.










Tentative BIOL 1404 Schedule, 2013
Week    Date     Topic                                                               Text Pages       Notes
1          Jan. 16   Natural Selection                                             476-485 NO 1404 labs this week
1          Jan. 18   Natural Selection/Altruism                                1134-1139        
2          Jan. 21   MARTIN LUTHER KING, JR HOLIDAY                           Labs do meet this week
2          Jan. 23    Altruism/Behavioral Ecology                           1118-1134
2          Jan. 25   Why have sex?                       
3          Jan. 28   Sexual Selection                     
3          Jan. 30   Population Ecology                                         1187-1191
3          Feb. 1     Population Ecology, cont.                                                       Last day to drop w/o penalty
4          Feb. 4     Human Population Growth                               198-200             BAC Elections this week
4          Feb. 6     Community Ecology                                       1194-1215
4          Feb. 8     Indirect Effects
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
5          Feb. 11   Ecosystem Ecology                                                                                                   
5          Feb. 12   Test #1 (Intro. through Indirect Effects)
5          Feb. 13   Introduction to Energetics                                142-151
5          Feb. 15   Photosynthesis I                                             184-203
6          Feb. 18   Photosynthesis II
6          Feb. 20   Photosynthesis/Cellular Respiration                  163-181                        
6          Feb. 22   Cellular Respiration II
7          Feb. 25   Angiosperms: Fruits and Seeds                       807-811
7          Feb. 27   Plant Diversity I                                               600-615
7          Mar. 1     Plant Diversity II                                              618-634
8          Mar. 4     Plant Diversity III
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
8          Mar. 5     Test #2 (Energetics through Plant Diversity)              
8          Mar. 6     Viruses                                                           381-394 2nd half of course begins
8          Mar. 8     Prokaryotes I                                                  551-553, 556-565          
9          Mar. 9-17  SPRING BREAK
10         Mar. 18   Prokaryotes II                                                  564-573 NO 1404 labs this week
10         Mar. 20   “Protists”                                                         575-579
10         Mar. 22   Fungi                                                              636-642, 648-652
11         Mar. 25   Invertebrates I                                                 654-673
11         Mar. 27   Invertebrates II                                     674-683 Last day to drop
11         Mar. 29   Invertebrates III                                                683-692
12         Apr. 1   UNIVERSITY HOLIDAY                                                             Labs do meet this week
12         Apr. 3     Invertebrates IV                                               692-695
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
12         Apr. 5     Vertebrates I                                                   697-709
13         Apr. 8     Vertebrates II                                                   709-717
13         Apr. 9     Test #3 (Viruses through Invertebrates)
13         Apr. 10   Vertebrates III                                                  717-724            
13         Apr. 12   Nervous System I                                            1045-1054
14         Apr. 15   Nervous System II                                           1055-1067
14         Apr. 17   Endocrine System I                                         974-982, 984-989
14         Apr. 19   Endocrine System II                                        989-993
15         Apr. 22   Circulatory System I                                        897-904, 913-914
15         Apr. 24   Circulatory System II                                        905-909
15         Apr. 26   Lymphatic/Immune System                              910-911, 929-946
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
16         Apr. 29  Respiratory System I                                       915-922            
16         Apr. 30 Test #4 (Vertebrates through Immune System)
16         May 1   Respiratory System II                                       923-926             Lab practical starts today
16         May 3   Digestive System I                                           880-886
17         May 6   Digestive System II                                          887-895

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